Material used during the practical sessions of the BNF202 module “New technologies in the biosciences and bioinformatics pipelines” I teach at the Conservatoire national des arts et métiers.

  • Package installation

Miscellaneous

Using R

Reproducible research

  • Using RStudio
  • Using git and GitHub in RStudio
  • Using RMarkdown

Bioinformatics

  • Introduction to Bioconductor: Biostrings
  • Analysing transcription start sites with BioMart

Genomics

Genotyping data

Massively-parallel sequencing

Databases

  • FANTOM